﻿2026-01-05T01:33:07.0204050Z Current runner version: '2.330.0'
2026-01-05T01:33:07.0219780Z ##[group]Runner Image Provisioner
2026-01-05T01:33:07.0220270Z Hosted Compute Agent
2026-01-05T01:33:07.0220630Z Version: 20251211.462
2026-01-05T01:33:07.0221010Z Commit: 6cbad8c2bb55d58165063d031ccabf57e2d2db61
2026-01-05T01:33:07.0221450Z Build Date: 2025-12-11T16:28:49Z
2026-01-05T01:33:07.0221830Z Worker ID: {ece1969f-59f0-452d-8ed6-e26d7856cb1d}
2026-01-05T01:33:07.0222240Z ##[endgroup]
2026-01-05T01:33:07.0222540Z ##[group]Operating System
2026-01-05T01:33:07.0222890Z macOS
2026-01-05T01:33:07.0223240Z 15.7.2
2026-01-05T01:33:07.0223490Z 24G325
2026-01-05T01:33:07.0223800Z ##[endgroup]
2026-01-05T01:33:07.0224080Z ##[group]Runner Image
2026-01-05T01:33:07.0224510Z Image: macos-15-arm64
2026-01-05T01:33:07.0224810Z Version: 20251215.0075.1
2026-01-05T01:33:07.0225470Z Included Software: https://github.com/actions/runner-images/blob/macos-15-arm64/20251215.0075/images/macos/macos-15-arm64-Readme.md
2026-01-05T01:33:07.0226470Z Image Release: https://github.com/actions/runner-images/releases/tag/macos-15-arm64%2F20251215.0075
2026-01-05T01:33:07.0227070Z ##[endgroup]
2026-01-05T01:33:07.0228740Z ##[group]GITHUB_TOKEN Permissions
2026-01-05T01:33:07.0229810Z Actions: write
2026-01-05T01:33:07.0230110Z ArtifactMetadata: write
2026-01-05T01:33:07.0230510Z Attestations: write
2026-01-05T01:33:07.0230840Z Checks: write
2026-01-05T01:33:07.0231150Z Contents: write
2026-01-05T01:33:07.0231480Z Deployments: write
2026-01-05T01:33:07.0231920Z Discussions: write
2026-01-05T01:33:07.0232370Z Issues: write
2026-01-05T01:33:07.0232790Z Metadata: read
2026-01-05T01:33:07.0233120Z Models: read
2026-01-05T01:33:07.0233420Z Packages: write
2026-01-05T01:33:07.0233880Z Pages: write
2026-01-05T01:33:07.0234340Z PullRequests: write
2026-01-05T01:33:07.0234820Z RepositoryProjects: write
2026-01-05T01:33:07.0235190Z SecurityEvents: write
2026-01-05T01:33:07.0235520Z Statuses: write
2026-01-05T01:33:07.0235840Z ##[endgroup]
2026-01-05T01:33:07.0237230Z Secret source: Actions
2026-01-05T01:33:07.0237660Z Prepare workflow directory
2026-01-05T01:33:07.0441070Z Prepare all required actions
2026-01-05T01:33:07.0467370Z Getting action download info
2026-01-05T01:33:07.3869340Z Download action repository 'actions/checkout@v4' (SHA:34e114876b0b11c390a56381ad16ebd13914f8d5)
2026-01-05T01:33:07.5809880Z Download action repository 'actions/setup-python@v5' (SHA:a26af69be951a213d495a4c3e4e4022e16d87065)
2026-01-05T01:33:07.6703950Z Download action repository 'actions/download-artifact@v4' (SHA:d3f86a106a0bac45b974a628896c90dbdf5c8093)
2026-01-05T01:33:08.9837920Z Complete job name: Test wheels on macos-latest with Python 3.10
2026-01-05T01:33:09.0238130Z ##[group]Run actions/checkout@v4
2026-01-05T01:33:09.0238740Z with:
2026-01-05T01:33:09.0239120Z   repository: worm-portal/aqequil
2026-01-05T01:33:09.0239720Z   token: ***
2026-01-05T01:33:09.0240070Z   ssh-strict: true
2026-01-05T01:33:09.0240590Z   ssh-user: git
2026-01-05T01:33:09.0241070Z   persist-credentials: true
2026-01-05T01:33:09.0241570Z   clean: true
2026-01-05T01:33:09.0242140Z   sparse-checkout-cone-mode: true
2026-01-05T01:33:09.0242620Z   fetch-depth: 1
2026-01-05T01:33:09.0242950Z   fetch-tags: false
2026-01-05T01:33:09.0243300Z   show-progress: true
2026-01-05T01:33:09.0243760Z   lfs: false
2026-01-05T01:33:09.0244130Z   submodules: false
2026-01-05T01:33:09.0244560Z   set-safe-directory: true
2026-01-05T01:33:09.0245140Z ##[endgroup]
2026-01-05T01:33:09.3901080Z Syncing repository: worm-portal/aqequil
2026-01-05T01:33:09.3902680Z ##[group]Getting Git version info
2026-01-05T01:33:09.3903230Z Working directory is '/Users/runner/work/aqequil/aqequil'
2026-01-05T01:33:09.3904910Z [command]/opt/homebrew/bin/git version
2026-01-05T01:33:09.4396460Z git version 2.50.1
2026-01-05T01:33:09.4428780Z ##[endgroup]
2026-01-05T01:33:09.4435480Z Copying '/Users/runner/.gitconfig' to '/Users/runner/work/_temp/dbb59dd4-abc2-46e5-b3fb-549cac0c6b91/.gitconfig'
2026-01-05T01:33:09.4440500Z Temporarily overriding HOME='/Users/runner/work/_temp/dbb59dd4-abc2-46e5-b3fb-549cac0c6b91' before making global git config changes
2026-01-05T01:33:09.4442130Z Adding repository directory to the temporary git global config as a safe directory
2026-01-05T01:33:09.4449770Z [command]/opt/homebrew/bin/git config --global --add safe.directory /Users/runner/work/aqequil/aqequil
2026-01-05T01:33:09.4544030Z Deleting the contents of '/Users/runner/work/aqequil/aqequil'
2026-01-05T01:33:09.4547920Z ##[group]Initializing the repository
2026-01-05T01:33:09.4551300Z [command]/opt/homebrew/bin/git init /Users/runner/work/aqequil/aqequil
2026-01-05T01:33:09.4724270Z hint: Using 'master' as the name for the initial branch. This default branch name
2026-01-05T01:33:09.4726510Z hint: is subject to change. To configure the initial branch name to use in all
2026-01-05T01:33:09.4727330Z hint: of your new repositories, which will suppress this warning, call:
2026-01-05T01:33:09.4727930Z hint:
2026-01-05T01:33:09.4728430Z hint: 	git config --global init.defaultBranch <name>
2026-01-05T01:33:09.4728930Z hint:
2026-01-05T01:33:09.4729370Z hint: Names commonly chosen instead of 'master' are 'main', 'trunk' and
2026-01-05T01:33:09.4730150Z hint: 'development'. The just-created branch can be renamed via this command:
2026-01-05T01:33:09.4730720Z hint:
2026-01-05T01:33:09.4731040Z hint: 	git branch -m <name>
2026-01-05T01:33:09.4731400Z hint:
2026-01-05T01:33:09.4731880Z hint: Disable this message with "git config set advice.defaultBranchName false"
2026-01-05T01:33:09.4732650Z Initialized empty Git repository in /Users/runner/work/aqequil/aqequil/.git/
2026-01-05T01:33:09.4734210Z [command]/opt/homebrew/bin/git remote add origin https://github.com/worm-portal/aqequil
2026-01-05T01:33:09.4796280Z ##[endgroup]
2026-01-05T01:33:09.4796900Z ##[group]Disabling automatic garbage collection
2026-01-05T01:33:09.4798380Z [command]/opt/homebrew/bin/git config --local gc.auto 0
2026-01-05T01:33:09.4851960Z ##[endgroup]
2026-01-05T01:33:09.4852550Z ##[group]Setting up auth
2026-01-05T01:33:09.4856170Z [command]/opt/homebrew/bin/git config --local --name-only --get-regexp core\.sshCommand
2026-01-05T01:33:09.4924520Z [command]/opt/homebrew/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :"
2026-01-05T01:33:09.5727970Z [command]/opt/homebrew/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader
2026-01-05T01:33:09.5778070Z [command]/opt/homebrew/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :"
2026-01-05T01:33:09.6355680Z [command]/opt/homebrew/bin/git config --local --name-only --get-regexp ^includeIf\.gitdir:
2026-01-05T01:33:09.6400320Z [command]/opt/homebrew/bin/git submodule foreach --recursive git config --local --show-origin --name-only --get-regexp remote.origin.url
2026-01-05T01:33:09.6994690Z [command]/opt/homebrew/bin/git config --local http.https://github.com/.extraheader AUTHORIZATION: basic ***
2026-01-05T01:33:09.7044790Z ##[endgroup]
2026-01-05T01:33:09.7045390Z ##[group]Fetching the repository
2026-01-05T01:33:09.7049920Z [command]/opt/homebrew/bin/git -c protocol.version=2 fetch --no-tags --prune --no-recurse-submodules --depth=1 origin +0fba8641708a9a29f5cf75d5e1aa5af56402a902:refs/tags/v1.0.1
2026-01-05T01:33:10.6876160Z From https://github.com/worm-portal/aqequil
2026-01-05T01:33:10.6879050Z  * [new ref]         0fba8641708a9a29f5cf75d5e1aa5af56402a902 -> v1.0.1
2026-01-05T01:33:10.6965230Z ##[endgroup]
2026-01-05T01:33:10.6965760Z ##[group]Determining the checkout info
2026-01-05T01:33:10.6966210Z ##[endgroup]
2026-01-05T01:33:10.6969110Z [command]/opt/homebrew/bin/git sparse-checkout disable
2026-01-05T01:33:10.7035890Z [command]/opt/homebrew/bin/git config --local --unset-all extensions.worktreeConfig
2026-01-05T01:33:10.7087610Z ##[group]Checking out the ref
2026-01-05T01:33:10.7089670Z [command]/opt/homebrew/bin/git checkout --progress --force refs/tags/v1.0.1
2026-01-05T01:33:10.8263210Z HEAD is now at 0fba864 Add automatic versioning from git tags using setuptools_scm
2026-01-05T01:33:10.8269410Z ##[endgroup]
2026-01-05T01:33:10.8344880Z [command]/opt/homebrew/bin/git log -1 --format=%H
2026-01-05T01:33:10.8403970Z 0fba8641708a9a29f5cf75d5e1aa5af56402a902
2026-01-05T01:33:10.8583210Z ##[group]Run actions/setup-python@v5
2026-01-05T01:33:10.8583520Z with:
2026-01-05T01:33:10.8583730Z   python-version: 3.10
2026-01-05T01:33:10.8583950Z   check-latest: false
2026-01-05T01:33:10.8584290Z   token: ***
2026-01-05T01:33:10.8584500Z   update-environment: true
2026-01-05T01:33:10.8584750Z   allow-prereleases: false
2026-01-05T01:33:10.8584960Z   freethreaded: false
2026-01-05T01:33:10.8585170Z ##[endgroup]
2026-01-05T01:33:10.9928230Z ##[group]Installed versions
2026-01-05T01:33:10.9975770Z Version 3.10 was not found in the local cache
2026-01-05T01:33:11.9954560Z Version 3.10 is available for downloading
2026-01-05T01:33:11.9955710Z Download from "https://github.com/actions/python-versions/releases/download/3.10.11-11114431484/python-3.10.11-darwin-arm64.tar.gz"
2026-01-05T01:33:12.6141390Z Extract downloaded archive
2026-01-05T01:33:12.6261620Z [command]/usr/bin/tar xz -C /Users/runner/work/_temp/29ae0c3b-85fd-4673-b22e-47f168acf4d8 -f /Users/runner/work/_temp/f23ccdf2-62c6-45a6-a7cf-0ff9877e89fb
2026-01-05T01:33:12.6808790Z Execute installation script
2026-01-05T01:33:12.6940760Z Check if Python hostedtoolcache folder exist...
2026-01-05T01:33:12.6981330Z Install Python binaries from prebuilt package
2026-01-05T01:33:24.4770820Z installer: Package name is Python
2026-01-05T01:33:24.4771930Z installer: Upgrading at base path /
2026-01-05T01:33:24.4773040Z installer: The upgrade was successful.
2026-01-05T01:33:24.4795520Z Create hostedtoolcach symlinks (Required for the backward compatibility)
2026-01-05T01:33:24.4796030Z Create Python 3.10.11 folder
2026-01-05T01:33:24.4922050Z Create additional symlinks (Required for the UsePythonVersion Azure Pipelines task and the setup-python GitHub Action)
2026-01-05T01:33:24.4987330Z Upgrading pip...
2026-01-05T01:33:25.5103900Z Looking in links: /var/folders/bp/kmfmhnl95kx1c8x321z7twbw0000gn/T/tmp402uzn34
2026-01-05T01:33:25.5105270Z Requirement already satisfied: setuptools in /Library/Frameworks/Python.framework/Versions/3.10/lib/python3.10/site-packages (65.5.0)
2026-01-05T01:33:25.5107920Z Requirement already satisfied: pip in /Library/Frameworks/Python.framework/Versions/3.10/lib/python3.10/site-packages (23.0.1)
2026-01-05T01:33:25.9042810Z Collecting pip
2026-01-05T01:33:25.9699090Z Downloading pip-25.3-py3-none-any.whl (1.8 MB)
2026-01-05T01:33:26.0444580Z ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 24.5 MB/s eta 0:00:00
2026-01-05T01:33:26.0444930Z 
2026-01-05T01:33:26.0735680Z Installing collected packages: pip
2026-01-05T01:33:26.0735940Z Attempting uninstall: pip
2026-01-05T01:33:26.0736390Z Found existing installation: pip 23.0.1
2026-01-05T01:33:26.1662580Z Uninstalling pip-23.0.1:
2026-01-05T01:33:26.3269670Z Successfully uninstalled pip-23.0.1
2026-01-05T01:33:26.8012460Z Successfully installed pip-25.3
2026-01-05T01:33:26.8325930Z Install OpenSSL certificates
2026-01-05T01:33:27.2063590Z Collecting certifi
2026-01-05T01:33:27.2513700Z Downloading certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB)
2026-01-05T01:33:27.3072560Z Downloading certifi-2026.1.4-py3-none-any.whl (152 kB)
2026-01-05T01:33:27.3705980Z Installing collected packages: certifi
2026-01-05T01:33:27.3755200Z Successfully installed certifi-2026.1.4
2026-01-05T01:33:27.5358350Z -- pip install --upgrade certifi
2026-01-05T01:33:27.5358700Z  -- removing any existing file or link
2026-01-05T01:33:27.5358930Z  -- creating symlink to certifi certificate bundle
2026-01-05T01:33:27.5359180Z  -- setting permissions
2026-01-05T01:33:27.5359350Z  -- update complete
2026-01-05T01:33:27.5402540Z Create complete file
2026-01-05T01:33:27.5475230Z Successfully set up CPython (3.10.11)
2026-01-05T01:33:27.5483190Z ##[endgroup]
2026-01-05T01:33:27.5583600Z ##[group]Run actions/download-artifact@v4
2026-01-05T01:33:27.5583800Z with:
2026-01-05T01:33:27.5583940Z   name: wheels-macos-latest
2026-01-05T01:33:27.5584090Z   path: wheelhouse
2026-01-05T01:33:27.5584220Z   merge-multiple: false
2026-01-05T01:33:27.5584390Z   repository: worm-portal/aqequil
2026-01-05T01:33:27.5584570Z   run-id: 20702070857
2026-01-05T01:33:27.5584700Z env:
2026-01-05T01:33:27.5584970Z   pythonLocation: /Users/runner/hostedtoolcache/Python/3.10.11/arm64
2026-01-05T01:33:27.5585370Z   PKG_CONFIG_PATH: /Users/runner/hostedtoolcache/Python/3.10.11/arm64/lib/pkgconfig
2026-01-05T01:33:27.5585730Z   Python_ROOT_DIR: /Users/runner/hostedtoolcache/Python/3.10.11/arm64
2026-01-05T01:33:27.5586080Z   Python2_ROOT_DIR: /Users/runner/hostedtoolcache/Python/3.10.11/arm64
2026-01-05T01:33:27.5586420Z   Python3_ROOT_DIR: /Users/runner/hostedtoolcache/Python/3.10.11/arm64
2026-01-05T01:33:27.5586670Z ##[endgroup]
2026-01-05T01:33:27.7073180Z Downloading single artifact
2026-01-05T01:33:27.9088300Z Preparing to download the following artifacts:
2026-01-05T01:33:27.9088970Z - wheels-macos-latest (ID: 5019930544, Size: 24541316, Expected Digest: sha256:2f97e24188ff83f6551a913b53fdccfb8f5d5a9f65e4979d0734e1ef8a9e1c42)
2026-01-05T01:33:28.0576620Z Redirecting to blob download url: https://productionresultssa18.blob.core.windows.net/actions-results/26a74c06-72e1-4403-8f14-91bf0d49fcbc/workflow-job-run-f38c2346-270b-5886-be73-912b89ebb7ce/artifacts/955ef54be1c50fb13a2980f81c148b7bb4d63dbb4dfacd45c21fd4e1b6813100.zip
2026-01-05T01:33:28.0578020Z Starting download of artifact to: /Users/runner/work/aqequil/aqequil/wheelhouse
2026-01-05T01:33:28.2385350Z (node:1454) [DEP0005] DeprecationWarning: Buffer() is deprecated due to security and usability issues. Please use the Buffer.alloc(), Buffer.allocUnsafe(), or Buffer.from() methods instead.
2026-01-05T01:33:28.2386630Z (Use `node --trace-deprecation ...` to show where the warning was created)
2026-01-05T01:33:29.3511100Z SHA256 digest of downloaded artifact is 2f97e24188ff83f6551a913b53fdccfb8f5d5a9f65e4979d0734e1ef8a9e1c42
2026-01-05T01:33:29.3511890Z Artifact download completed successfully.
2026-01-05T01:33:29.3512370Z Total of 1 artifact(s) downloaded
2026-01-05T01:33:29.3519540Z Download artifact has finished successfully
2026-01-05T01:33:29.3616530Z ##[group]Run PYVER=$(echo "3.10" | tr -d '.')
2026-01-05T01:33:29.3617070Z [36;1mPYVER=$(echo "3.10" | tr -d '.')[0m
2026-01-05T01:33:29.3617540Z [36;1mpython -m pip install wheelhouse/aqequil-*-cp${PYVER}-*.whl[0m
2026-01-05T01:33:29.3671660Z shell: /bin/bash --noprofile --norc -e -o pipefail {0}
2026-01-05T01:33:29.3671980Z env:
2026-01-05T01:33:29.3672350Z   pythonLocation: /Users/runner/hostedtoolcache/Python/3.10.11/arm64
2026-01-05T01:33:29.3673240Z   PKG_CONFIG_PATH: /Users/runner/hostedtoolcache/Python/3.10.11/arm64/lib/pkgconfig
2026-01-05T01:33:29.3673800Z   Python_ROOT_DIR: /Users/runner/hostedtoolcache/Python/3.10.11/arm64
2026-01-05T01:33:29.3674510Z   Python2_ROOT_DIR: /Users/runner/hostedtoolcache/Python/3.10.11/arm64
2026-01-05T01:33:29.3674960Z   Python3_ROOT_DIR: /Users/runner/hostedtoolcache/Python/3.10.11/arm64
2026-01-05T01:33:29.3675270Z ##[endgroup]
2026-01-05T01:33:29.5961850Z Processing ./wheelhouse/aqequil-1.0.2.dev0+g0fba86417.d20260105-cp310-cp310-macosx_15_0_arm64.whl
2026-01-05T01:33:29.7520270Z Collecting pandas (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:29.8042470Z   Downloading pandas-2.3.3-cp310-cp310-macosx_11_0_arm64.whl.metadata (91 kB)
2026-01-05T01:33:29.9776700Z Collecting numpy (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:29.9935170Z   Downloading numpy-2.2.6-cp310-cp310-macosx_14_0_arm64.whl.metadata (62 kB)
2026-01-05T01:33:30.1019300Z Collecting matplotlib (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:30.1224290Z   Downloading matplotlib-3.10.8-cp310-cp310-macosx_11_0_arm64.whl.metadata (52 kB)
2026-01-05T01:33:30.1620570Z Collecting plotly (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:30.1784240Z   Downloading plotly-6.5.0-py3-none-any.whl.metadata (8.5 kB)
2026-01-05T01:33:30.2195390Z Collecting ipython (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:30.2358920Z   Downloading ipython-8.37.0-py3-none-any.whl.metadata (5.1 kB)
2026-01-05T01:33:30.2634890Z Collecting chemparse (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:30.2804660Z   Downloading chemparse-0.3.2-py3-none-any.whl.metadata (1.7 kB)
2026-01-05T01:33:30.3020080Z Collecting dill (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:30.3171030Z   Downloading dill-0.4.0-py3-none-any.whl.metadata (10 kB)
2026-01-05T01:33:30.3415610Z Collecting periodictable (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:30.3643290Z   Downloading periodictable-2.0.2-py3-none-any.whl.metadata (5.4 kB)
2026-01-05T01:33:30.3911270Z Collecting natsort (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:30.4078190Z   Downloading natsort-8.4.0-py3-none-any.whl.metadata (21 kB)
2026-01-05T01:33:30.4294460Z Collecting roman (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:30.4450630Z   Downloading roman-5.2-py3-none-any.whl.metadata (4.3 kB)
2026-01-05T01:33:30.4761390Z Collecting ipywidgets (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:30.4907700Z   Downloading ipywidgets-8.1.8-py3-none-any.whl.metadata (2.4 kB)
2026-01-05T01:33:30.5123670Z Collecting wormutils (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:30.5285290Z   Downloading wormutils-0.2.0-py3-none-any.whl.metadata (723 bytes)
2026-01-05T01:33:30.5590100Z Collecting pychnosz (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:30.7379040Z   Downloading pychnosz-1.1.12-cp310-cp310-macosx_15_0_arm64.whl.metadata (8.2 kB)
2026-01-05T01:33:30.7761930Z Collecting decorator (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:30.7917330Z   Downloading decorator-5.2.1-py3-none-any.whl.metadata (3.9 kB)
2026-01-05T01:33:30.8130470Z Collecting exceptiongroup (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:30.8280160Z   Downloading exceptiongroup-1.3.1-py3-none-any.whl.metadata (6.7 kB)
2026-01-05T01:33:30.8506810Z Collecting jedi>=0.16 (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:30.8657070Z   Downloading jedi-0.19.2-py2.py3-none-any.whl.metadata (22 kB)
2026-01-05T01:33:30.8943580Z Collecting matplotlib-inline (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:30.9092910Z   Downloading matplotlib_inline-0.2.1-py3-none-any.whl.metadata (2.3 kB)
2026-01-05T01:33:30.9331380Z Collecting pexpect>4.3 (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:30.9482940Z   Downloading pexpect-4.9.0-py2.py3-none-any.whl.metadata (2.5 kB)
2026-01-05T01:33:30.9807050Z Collecting prompt_toolkit<3.1.0,>=3.0.41 (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:30.9962370Z   Downloading prompt_toolkit-3.0.52-py3-none-any.whl.metadata (6.4 kB)
2026-01-05T01:33:31.0220330Z Collecting pygments>=2.4.0 (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:31.0375050Z   Downloading pygments-2.19.2-py3-none-any.whl.metadata (2.5 kB)
2026-01-05T01:33:31.0582850Z Collecting stack_data (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:31.0737330Z   Downloading stack_data-0.6.3-py3-none-any.whl.metadata (18 kB)
2026-01-05T01:33:31.0984170Z Collecting traitlets>=5.13.0 (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:31.1135970Z   Downloading traitlets-5.14.3-py3-none-any.whl.metadata (10 kB)
2026-01-05T01:33:31.1382590Z Collecting typing_extensions>=4.6 (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:31.1532920Z   Downloading typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
2026-01-05T01:33:31.1761370Z Collecting wcwidth (from prompt_toolkit<3.1.0,>=3.0.41->ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:31.1906880Z   Downloading wcwidth-0.2.14-py2.py3-none-any.whl.metadata (15 kB)
2026-01-05T01:33:31.2147110Z Collecting parso<0.9.0,>=0.8.4 (from jedi>=0.16->ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:31.2298630Z   Downloading parso-0.8.5-py2.py3-none-any.whl.metadata (8.3 kB)
2026-01-05T01:33:31.2519870Z Collecting ptyprocess>=0.5 (from pexpect>4.3->ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:31.2667110Z   Downloading ptyprocess-0.7.0-py2.py3-none-any.whl.metadata (1.3 kB)
2026-01-05T01:33:31.2898570Z Collecting comm>=0.1.3 (from ipywidgets->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:31.3045020Z   Downloading comm-0.2.3-py3-none-any.whl.metadata (3.7 kB)
2026-01-05T01:33:31.3451840Z Collecting widgetsnbextension~=4.0.14 (from ipywidgets->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:31.3602610Z   Downloading widgetsnbextension-4.0.15-py3-none-any.whl.metadata (1.6 kB)
2026-01-05T01:33:31.3850710Z Collecting jupyterlab_widgets~=3.0.15 (from ipywidgets->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:31.4007430Z   Downloading jupyterlab_widgets-3.0.16-py3-none-any.whl.metadata (20 kB)
2026-01-05T01:33:31.4559930Z Collecting contourpy>=1.0.1 (from matplotlib->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:31.4715000Z   Downloading contourpy-1.3.2-cp310-cp310-macosx_11_0_arm64.whl.metadata (5.5 kB)
2026-01-05T01:33:31.4934990Z Collecting cycler>=0.10 (from matplotlib->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:31.5082170Z   Downloading cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB)
2026-01-05T01:33:31.6397030Z Collecting fonttools>=4.22.0 (from matplotlib->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:31.6572230Z   Downloading fonttools-4.61.1-cp310-cp310-macosx_10_9_universal2.whl.metadata (114 kB)
2026-01-05T01:33:31.7171070Z Collecting kiwisolver>=1.3.1 (from matplotlib->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:31.7329860Z   Downloading kiwisolver-1.4.9-cp310-cp310-macosx_11_0_arm64.whl.metadata (6.3 kB)
2026-01-05T01:33:31.7621650Z Collecting packaging>=20.0 (from matplotlib->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:31.7774080Z   Downloading packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
2026-01-05T01:33:31.8910360Z Collecting pillow>=8 (from matplotlib->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:31.9071740Z   Downloading pillow-12.1.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (8.8 kB)
2026-01-05T01:33:31.9400790Z Collecting pyparsing>=3 (from matplotlib->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:31.9552720Z   Downloading pyparsing-3.3.1-py3-none-any.whl.metadata (5.6 kB)
2026-01-05T01:33:31.9770170Z Collecting python-dateutil>=2.7 (from matplotlib->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:31.9919660Z   Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
2026-01-05T01:33:32.0187730Z Collecting six>=1.5 (from python-dateutil>=2.7->matplotlib->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:32.0339760Z   Downloading six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
2026-01-05T01:33:32.0828890Z Collecting pytz>=2020.1 (from pandas->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:32.0981420Z   Downloading pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
2026-01-05T01:33:32.1199370Z Collecting tzdata>=2022.7 (from pandas->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:32.1348130Z   Downloading tzdata-2025.3-py2.py3-none-any.whl.metadata (1.4 kB)
2026-01-05T01:33:32.2032630Z Collecting narwhals>=1.15.1 (from plotly->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:32.2190670Z   Downloading narwhals-2.14.0-py3-none-any.whl.metadata (13 kB)
2026-01-05T01:33:32.3263600Z Collecting scipy>=1.7.0 (from pychnosz->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:32.3469940Z   Downloading scipy-1.15.3-cp310-cp310-macosx_14_0_arm64.whl.metadata (61 kB)
2026-01-05T01:33:32.3920430Z Collecting executing>=1.2.0 (from stack_data->ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:32.4069900Z   Downloading executing-2.2.1-py2.py3-none-any.whl.metadata (8.9 kB)
2026-01-05T01:33:32.4332750Z Collecting asttokens>=2.1.0 (from stack_data->ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:32.4482130Z   Downloading asttokens-3.0.1-py3-none-any.whl.metadata (4.9 kB)
2026-01-05T01:33:32.4682160Z Collecting pure-eval (from stack_data->ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:32.4832410Z   Downloading pure_eval-0.2.3-py3-none-any.whl.metadata (6.3 kB)
2026-01-05T01:33:32.5161920Z Collecting requests (from wormutils->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:32.5311720Z   Downloading requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
2026-01-05T01:33:32.5590150Z Collecting importlib_resources (from wormutils->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:32.5743750Z   Downloading importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
2026-01-05T01:33:32.6419680Z Collecting charset_normalizer<4,>=2 (from requests->wormutils->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:32.6591700Z   Downloading charset_normalizer-3.4.4-cp310-cp310-macosx_10_9_universal2.whl.metadata (37 kB)
2026-01-05T01:33:32.6818010Z Collecting idna<4,>=2.5 (from requests->wormutils->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:32.6967060Z   Downloading idna-3.11-py3-none-any.whl.metadata (8.4 kB)
2026-01-05T01:33:32.7292870Z Collecting urllib3<3,>=1.21.1 (from requests->wormutils->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:32.7444590Z   Downloading urllib3-2.6.2-py3-none-any.whl.metadata (6.6 kB)
2026-01-05T01:33:32.7487480Z Requirement already satisfied: certifi>=2017.4.17 in /Library/Frameworks/Python.framework/Versions/3.10/lib/python3.10/site-packages (from requests->wormutils->aqequil==1.0.2.dev0+g0fba86417.d20260105) (2026.1.4)
2026-01-05T01:33:32.7695840Z Downloading chemparse-0.3.2-py3-none-any.whl (5.9 kB)
2026-01-05T01:33:32.7871160Z Downloading dill-0.4.0-py3-none-any.whl (119 kB)
2026-01-05T01:33:32.8068850Z Downloading ipython-8.37.0-py3-none-any.whl (831 kB)
2026-01-05T01:33:32.8363620Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 831.9/831.9 kB 35.5 MB/s  0:00:00
2026-01-05T01:33:32.8515900Z Downloading prompt_toolkit-3.0.52-py3-none-any.whl (391 kB)
2026-01-05T01:33:32.8739860Z Downloading jedi-0.19.2-py2.py3-none-any.whl (1.6 MB)
2026-01-05T01:33:32.8926140Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.6/1.6 MB 77.8 MB/s  0:00:00
2026-01-05T01:33:32.9082590Z Downloading parso-0.8.5-py2.py3-none-any.whl (106 kB)
2026-01-05T01:33:32.9257910Z Downloading pexpect-4.9.0-py2.py3-none-any.whl (63 kB)
2026-01-05T01:33:32.9444300Z Downloading ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB)
2026-01-05T01:33:32.9620610Z Downloading pygments-2.19.2-py3-none-any.whl (1.2 MB)
2026-01-05T01:33:32.9690050Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 181.5 MB/s  0:00:00
2026-01-05T01:33:32.9839430Z Downloading traitlets-5.14.3-py3-none-any.whl (85 kB)
2026-01-05T01:33:33.0022800Z Downloading typing_extensions-4.15.0-py3-none-any.whl (44 kB)
2026-01-05T01:33:33.0202060Z Downloading decorator-5.2.1-py3-none-any.whl (9.2 kB)
2026-01-05T01:33:33.0376390Z Downloading exceptiongroup-1.3.1-py3-none-any.whl (16 kB)
2026-01-05T01:33:33.0552420Z Downloading ipywidgets-8.1.8-py3-none-any.whl (139 kB)
2026-01-05T01:33:33.0732370Z Downloading jupyterlab_widgets-3.0.16-py3-none-any.whl (914 kB)
2026-01-05T01:33:33.0812230Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 914.9/914.9 kB 119.9 MB/s  0:00:00
2026-01-05T01:33:33.0972610Z Downloading widgetsnbextension-4.0.15-py3-none-any.whl (2.2 MB)
2026-01-05T01:33:33.1126720Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.2/2.2 MB 138.0 MB/s  0:00:00
2026-01-05T01:33:33.1280140Z Downloading comm-0.2.3-py3-none-any.whl (7.3 kB)
2026-01-05T01:33:33.1481390Z Downloading matplotlib-3.10.8-cp310-cp310-macosx_11_0_arm64.whl (8.1 MB)
2026-01-05T01:33:33.1972950Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.1/8.1 MB 165.1 MB/s  0:00:00
2026-01-05T01:33:33.2172000Z Downloading contourpy-1.3.2-cp310-cp310-macosx_11_0_arm64.whl (253 kB)
2026-01-05T01:33:33.2360780Z Downloading cycler-0.12.1-py3-none-any.whl (8.3 kB)
2026-01-05T01:33:33.2590770Z Downloading fonttools-4.61.1-cp310-cp310-macosx_10_9_universal2.whl (2.9 MB)
2026-01-05T01:33:33.2783840Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.9/2.9 MB 147.4 MB/s  0:00:00
2026-01-05T01:33:33.2950210Z Downloading kiwisolver-1.4.9-cp310-cp310-macosx_11_0_arm64.whl (65 kB)
2026-01-05T01:33:33.3142340Z Downloading numpy-2.2.6-cp310-cp310-macosx_14_0_arm64.whl (5.3 MB)
2026-01-05T01:33:33.3493540Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 5.3/5.3 MB 153.2 MB/s  0:00:00
2026-01-05T01:33:33.3647790Z Downloading packaging-25.0-py3-none-any.whl (66 kB)
2026-01-05T01:33:33.3914070Z Downloading pillow-12.1.0-cp310-cp310-macosx_11_0_arm64.whl (4.7 MB)
2026-01-05T01:33:33.4117370Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.7/4.7 MB 231.7 MB/s  0:00:00
2026-01-05T01:33:33.4278850Z Downloading pyparsing-3.3.1-py3-none-any.whl (121 kB)
2026-01-05T01:33:33.4454900Z Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
2026-01-05T01:33:33.4635130Z Downloading six-1.17.0-py2.py3-none-any.whl (11 kB)
2026-01-05T01:33:33.4811900Z Downloading matplotlib_inline-0.2.1-py3-none-any.whl (9.5 kB)
2026-01-05T01:33:33.4982040Z Downloading natsort-8.4.0-py3-none-any.whl (38 kB)
2026-01-05T01:33:33.5166330Z Downloading pandas-2.3.3-cp310-cp310-macosx_11_0_arm64.whl (10.8 MB)
2026-01-05T01:33:33.5661390Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 10.8/10.8 MB 220.8 MB/s  0:00:00
2026-01-05T01:33:33.5828080Z Downloading pytz-2025.2-py2.py3-none-any.whl (509 kB)
2026-01-05T01:33:33.6012070Z Downloading tzdata-2025.3-py2.py3-none-any.whl (348 kB)
2026-01-05T01:33:33.6215520Z Downloading periodictable-2.0.2-py3-none-any.whl (811 kB)
2026-01-05T01:33:33.6285480Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 811.1/811.1 kB 98.7 MB/s  0:00:00
2026-01-05T01:33:33.6439120Z Downloading plotly-6.5.0-py3-none-any.whl (9.9 MB)
2026-01-05T01:33:33.6926820Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.9/9.9 MB 205.7 MB/s  0:00:00
2026-01-05T01:33:33.7088270Z Downloading narwhals-2.14.0-py3-none-any.whl (430 kB)
2026-01-05T01:33:33.7297500Z Downloading pychnosz-1.1.12-cp310-cp310-macosx_15_0_arm64.whl (1.3 MB)
2026-01-05T01:33:33.7431550Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.3/1.3 MB 94.6 MB/s  0:00:00
2026-01-05T01:33:33.7616770Z Downloading scipy-1.15.3-cp310-cp310-macosx_14_0_arm64.whl (22.4 MB)
2026-01-05T01:33:33.8728540Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 22.4/22.4 MB 201.7 MB/s  0:00:00
2026-01-05T01:33:33.8947860Z Downloading roman-5.2-py3-none-any.whl (6.0 kB)
2026-01-05T01:33:33.9130270Z Downloading stack_data-0.6.3-py3-none-any.whl (24 kB)
2026-01-05T01:33:33.9316940Z Downloading asttokens-3.0.1-py3-none-any.whl (27 kB)
2026-01-05T01:33:33.9505940Z Downloading executing-2.2.1-py2.py3-none-any.whl (28 kB)
2026-01-05T01:33:33.9972820Z Downloading pure_eval-0.2.3-py3-none-any.whl (11 kB)
2026-01-05T01:33:34.0250150Z Downloading wcwidth-0.2.14-py2.py3-none-any.whl (37 kB)
2026-01-05T01:33:34.0472390Z Downloading wormutils-0.2.0-py3-none-any.whl (18 kB)
2026-01-05T01:33:34.0670380Z Downloading importlib_resources-6.5.2-py3-none-any.whl (37 kB)
2026-01-05T01:33:34.0851940Z Downloading requests-2.32.5-py3-none-any.whl (64 kB)
2026-01-05T01:33:34.1048050Z Downloading charset_normalizer-3.4.4-cp310-cp310-macosx_10_9_universal2.whl (209 kB)
2026-01-05T01:33:34.1232620Z Downloading idna-3.11-py3-none-any.whl (71 kB)
2026-01-05T01:33:34.1409060Z Downloading urllib3-2.6.2-py3-none-any.whl (131 kB)
2026-01-05T01:33:34.3612210Z Installing collected packages: pytz, pure-eval, ptyprocess, widgetsnbextension, wcwidth, urllib3, tzdata, typing_extensions, traitlets, six, roman, pyparsing, pygments, pillow, pexpect, parso, packaging, numpy, natsort, narwhals, kiwisolver, jupyterlab_widgets, importlib_resources, idna, fonttools, executing, dill, decorator, cycler, comm, chemparse, charset_normalizer, asttokens, stack_data, scipy, requests, python-dateutil, prompt_toolkit, plotly, periodictable, matplotlib-inline, jedi, exceptiongroup, contourpy, pandas, matplotlib, ipython, wormutils, pychnosz, ipywidgets, aqequil
2026-01-05T01:33:45.0089930Z 
2026-01-05T01:33:45.0150230Z Successfully installed aqequil-1.0.2.dev0+g0fba86417.d20260105 asttokens-3.0.1 charset_normalizer-3.4.4 chemparse-0.3.2 comm-0.2.3 contourpy-1.3.2 cycler-0.12.1 decorator-5.2.1 dill-0.4.0 exceptiongroup-1.3.1 executing-2.2.1 fonttools-4.61.1 idna-3.11 importlib_resources-6.5.2 ipython-8.37.0 ipywidgets-8.1.8 jedi-0.19.2 jupyterlab_widgets-3.0.16 kiwisolver-1.4.9 matplotlib-3.10.8 matplotlib-inline-0.2.1 narwhals-2.14.0 natsort-8.4.0 numpy-2.2.6 packaging-25.0 pandas-2.3.3 parso-0.8.5 periodictable-2.0.2 pexpect-4.9.0 pillow-12.1.0 plotly-6.5.0 prompt_toolkit-3.0.52 ptyprocess-0.7.0 pure-eval-0.2.3 pychnosz-1.1.12 pygments-2.19.2 pyparsing-3.3.1 python-dateutil-2.9.0.post0 pytz-2025.2 requests-2.32.5 roman-5.2 scipy-1.15.3 six-1.17.0 stack_data-0.6.3 traitlets-5.14.3 typing_extensions-4.15.0 tzdata-2025.3 urllib3-2.6.2 wcwidth-0.2.14 widgetsnbextension-4.0.15 wormutils-0.2.0
2026-01-05T01:33:45.3125220Z ##[group]Run cd "$RUNNER_TEMP"
2026-01-05T01:33:45.3125520Z [36;1mcd "$RUNNER_TEMP"[0m
2026-01-05T01:33:45.3125820Z [36;1mecho "Checking architecture of bundled executables..."[0m
2026-01-05T01:33:45.3126890Z [36;1mpython -c "import aqequil; from aqequil.AqSpeciation import _get_bundled_exe_path; import os; bin_path = _get_bundled_exe_path(); print(f'Binary path: {bin_path}'); import subprocess; result = subprocess.run(['file', os.path.join(bin_path, 'eqpt')], capture_output=True, text=True); print(result.stdout)"[0m
2026-01-05T01:33:45.3169520Z shell: /bin/bash --noprofile --norc -e -o pipefail {0}
2026-01-05T01:33:45.3169820Z env:
2026-01-05T01:33:45.3170150Z   pythonLocation: /Users/runner/hostedtoolcache/Python/3.10.11/arm64
2026-01-05T01:33:45.3170570Z   PKG_CONFIG_PATH: /Users/runner/hostedtoolcache/Python/3.10.11/arm64/lib/pkgconfig
2026-01-05T01:33:45.3171120Z   Python_ROOT_DIR: /Users/runner/hostedtoolcache/Python/3.10.11/arm64
2026-01-05T01:33:45.3171700Z   Python2_ROOT_DIR: /Users/runner/hostedtoolcache/Python/3.10.11/arm64
2026-01-05T01:33:45.3172100Z   Python3_ROOT_DIR: /Users/runner/hostedtoolcache/Python/3.10.11/arm64
2026-01-05T01:33:45.3172420Z ##[endgroup]
2026-01-05T01:33:45.3978610Z Checking architecture of bundled executables...
2026-01-05T01:33:51.6631720Z Matplotlib is building the font cache; this may take a moment.
2026-01-05T01:33:56.2996680Z Binary path: /Library/Frameworks/Python.framework/Versions/3.10/lib/python3.10/site-packages/aqequil/bin
2026-01-05T01:33:56.2997500Z /Library/Frameworks/Python.framework/Versions/3.10/lib/python3.10/site-packages/aqequil/bin/eqpt: Mach-O 64-bit executable arm64
2026-01-05T01:33:56.2997970Z 
2026-01-05T01:33:56.4517720Z ##[group]Run cp "$GITHUB_WORKSPACE/test_integration.py" "$RUNNER_TEMP/"
2026-01-05T01:33:56.4518210Z [36;1mcp "$GITHUB_WORKSPACE/test_integration.py" "$RUNNER_TEMP/"[0m
2026-01-05T01:33:56.4518890Z [36;1mcd "$RUNNER_TEMP"[0m
2026-01-05T01:33:56.4519120Z [36;1mpython test_integration.py[0m
2026-01-05T01:33:56.4549960Z shell: /bin/bash --noprofile --norc -e -o pipefail {0}
2026-01-05T01:33:56.4550330Z env:
2026-01-05T01:33:56.4550620Z   pythonLocation: /Users/runner/hostedtoolcache/Python/3.10.11/arm64
2026-01-05T01:33:56.4551070Z   PKG_CONFIG_PATH: /Users/runner/hostedtoolcache/Python/3.10.11/arm64/lib/pkgconfig
2026-01-05T01:33:56.4551560Z   Python_ROOT_DIR: /Users/runner/hostedtoolcache/Python/3.10.11/arm64
2026-01-05T01:33:56.4551960Z   Python2_ROOT_DIR: /Users/runner/hostedtoolcache/Python/3.10.11/arm64
2026-01-05T01:33:56.4552400Z   Python3_ROOT_DIR: /Users/runner/hostedtoolcache/Python/3.10.11/arm64
2026-01-05T01:33:56.4552770Z ##[endgroup]
2026-01-05T01:34:14.1411320Z 
2026-01-05T01:34:14.1412490Z ============================================================
2026-01-05T01:34:14.1412960Z AQEQUIL INTEGRATION TEST SUITE
2026-01-05T01:34:14.1413470Z ============================================================
2026-01-05T01:34:14.1413960Z Python: 3.10.11
2026-01-05T01:34:14.1414320Z Platform: darwin
2026-01-05T01:34:14.1414630Z Architecture: arm64
2026-01-05T01:34:14.1415090Z ============================================================
2026-01-05T01:34:14.1415470Z ============================================================
2026-01-05T01:34:14.1415860Z Test 1: Checking for bundled EQ3/6 executables
2026-01-05T01:34:14.1416330Z ============================================================
2026-01-05T01:34:14.1417010Z [OK] Found bundled executables at: /Library/Frameworks/Python.framework/Versions/3.10/lib/python3.10/site-packages/aqequil/bin
2026-01-05T01:34:14.1417810Z   [OK] eq3nr (0.90 MB)
2026-01-05T01:34:14.1418180Z   [OK] eq6 (1.53 MB)
2026-01-05T01:34:14.1418540Z   [OK] eqpt (0.55 MB)
2026-01-05T01:34:14.1418850Z 
2026-01-05T01:34:14.1419090Z ============================================================
2026-01-05T01:34:14.1419510Z Test 2: Testing aqequil import and basic usage
2026-01-05T01:34:14.1420000Z ============================================================
2026-01-05T01:34:14.1420510Z [OK] Successfully imported aqequil
2026-01-05T01:34:14.1421170Z [OK] Found test data at: /Library/Frameworks/Python.framework/Versions/3.10/lib/python3.10/site-packages/aqequil/test_data/input_example_wrm.csv
2026-01-05T01:34:14.1421800Z 
2026-01-05T01:34:14.1422060Z ============================================================
2026-01-05T01:34:14.1422470Z Test 3: Downloading latest data0.wrm from WORM-db
2026-01-05T01:34:14.1422920Z ============================================================
2026-01-05T01:34:14.1423600Z Downloading data0.wrm from https://raw.githubusercontent.com/worm-portal/WORM-db/master/data0.wrm...
2026-01-05T01:34:14.1424180Z [OK] Downloaded data0.wrm (573.8 KB)
2026-01-05T01:34:14.1424720Z [OK] Copied data0.wrm to test_data (replaced existing)
2026-01-05T01:34:14.1425210Z [OK] Copied data0.wrm to databases (replaced existing)
2026-01-05T01:34:14.1425590Z 
2026-01-05T01:34:14.1425830Z ============================================================
2026-01-05T01:34:14.1426320Z Test 4: Testing runeqpt (data0 to data1 conversion)
2026-01-05T01:34:14.1426820Z ============================================================
2026-01-05T01:34:14.1427340Z [INFO] Working directory: /var/folders/bp/kmfmhnl95kx1c8x321z7twbw0000gn/T/tmp81br3y9t
2026-01-05T01:34:14.1429910Z [OK] Copied data0.wrm to working directory
2026-01-05T01:34:14.1430360Z Running EQPT on data0.wrm...
2026-01-05T01:34:14.1430680Z [OK] EQPT completed
2026-01-05T01:34:14.1430980Z [OK] data1.wrm created (0.36 MB)
2026-01-05T01:34:14.1431470Z [OK] Copied data1.wrm to bundled databases (replaced existing)
2026-01-05T01:34:14.1431820Z 
2026-01-05T01:34:14.1433080Z ============================================================
2026-01-05T01:34:14.1433540Z Test 5: Testing simple speciation (wrm database)
2026-01-05T01:34:14.1433930Z ============================================================
2026-01-05T01:34:14.1439290Z Running speciation on /Library/Frameworks/Python.framework/Versions/3.10/lib/python3.10/site-packages/aqequil/test_data/input_example_wrm.csv...
2026-01-05T01:34:14.1440130Z [INFO] Working directory: /var/folders/bp/kmfmhnl95kx1c8x321z7twbw0000gn/T/tmpu07pm_3o
2026-01-05T01:34:14.1440560Z [OK] Copied data0.wrm to working directory
2026-01-05T01:34:14.1440950Z Running EQPT to create data1.wrm...
2026-01-05T01:34:14.1441260Z [OK] EQPT completed, data1.wrm created
2026-01-05T01:34:14.1441560Z [OK] AqEquil instance created with wrm database
2026-01-05T01:34:14.1442240Z The input file column 'logfO2' will be used to set sample redox state. If a another column is desired, set it manually using the redox_flag parameter.
2026-01-05T01:34:14.1442990Z No 'charge_balance_on' column found in input file. Defaulting to no charge balancing for all samples.
2026-01-05T01:34:14.1443720Z Warning: no 'logfO2' column found. Attempting to find a column for aqueous O2 to estimate logfO2 at sample temperature and pressure...
2026-01-05T01:34:14.1444350Z Using wrm to speciate Bison Pool
2026-01-05T01:34:14.1444590Z Using wrm to speciate Spray Geyser Source
2026-01-05T01:34:14.1445230Z Warning: non-numeric aqueous O2 value in sample Crater Hills Geyser. Resorting to using Log fO2 (log bars) with a value of -6
2026-01-05T01:34:14.1445800Z Using wrm to speciate Crater Hills Geyser
2026-01-05T01:34:14.1446090Z Using wrm to speciate Ambergris
2026-01-05T01:34:14.1446390Z Using wrm to speciate MLS Source
2026-01-05T01:34:14.1446650Z Using wrm to speciate Gas Crack
2026-01-05T01:34:14.1446900Z Using wrm to speciate Snail
2026-01-05T01:34:14.1447730Z Finished!
2026-01-05T01:34:14.1447970Z [OK] Speciation completed
2026-01-05T01:34:14.1448250Z [OK] aq_distribution is a DataFrame with 81 rows
2026-01-05T01:34:14.1448480Z 
2026-01-05T01:34:14.1448680Z ============================================================
2026-01-05T01:34:14.1449040Z Test 6: Testing water-rock reaction
2026-01-05T01:34:14.1449330Z ============================================================
2026-01-05T01:34:14.1450030Z Running speciation on /Library/Frameworks/Python.framework/Versions/3.10/lib/python3.10/site-packages/aqequil/test_data/input_example_wrm.csv...
2026-01-05T01:34:14.1450760Z [INFO] Working directory: /var/folders/bp/kmfmhnl95kx1c8x321z7twbw0000gn/T/tmp7a64vift
2026-01-05T01:34:14.1451260Z [OK] Copied wrm_data_latest.csv to bundled databases (replaced existing)
2026-01-05T01:34:14.1451760Z [OK] Copied elements.csv to bundled databases (replaced existing)
2026-01-05T01:34:14.1452310Z [OK] Copied solid_solutions.csv to bundled databases (replaced existing)
2026-01-05T01:34:14.1453030Z [OK] Copied wrm_data_logk.csv to bundled databases (replaced existing)
2026-01-05T01:34:14.1453450Z [OK] Copied wrm_data_logk_s.csv to bundled databases (replaced existing)
2026-01-05T01:34:14.1454100Z The input file column 'logfO2' will be used to set sample redox state. If a another column is desired, set it manually using the redox_flag parameter.
2026-01-05T01:34:14.1454840Z Getting wrm_data_latest.csv ready. This will take a moment...
2026-01-05T01:34:14.1455360Z No 'charge_balance_on' column found in input file. Defaulting to no charge balancing for all samples.
2026-01-05T01:34:14.1456040Z Warning: a column for Pressure was not found in the sample input file. Defaulting to water saturation pressure...
2026-01-05T01:34:14.1456890Z Warning: no 'logfO2' column found. Attempting to find a column for aqueous O2 to estimate logfO2 at sample temperature and pressure...
2026-01-05T01:34:14.1457520Z Using wrm_data_latest.csv to speciate Bison Pool
2026-01-05T01:34:14.1457960Z Using wrm_data_latest.csv to speciate Spray Geyser Source
2026-01-05T01:34:14.1458580Z Warning: non-numeric aqueous O2 value in sample Crater Hills Geyser. Resorting to using Log fO2 (log bars) with a value of -6
2026-01-05T01:34:14.1459450Z Using wrm_data_latest.csv to speciate Crater Hills Geyser
2026-01-05T01:34:14.1459920Z Using wrm_data_latest.csv to speciate Ambergris
2026-01-05T01:34:14.1460630Z Using wrm_data_latest.csv to speciate MLS Source
2026-01-05T01:34:14.1460990Z Using wrm_data_latest.csv to speciate Gas Crack
2026-01-05T01:34:14.1461410Z Using wrm_data_latest.csv to speciate Snail
2026-01-05T01:34:14.1461660Z Finished!
2026-01-05T01:34:14.1461870Z [OK] Initial speciation completed
2026-01-05T01:34:14.1462200Z [OK] Reaction prepared
2026-01-05T01:34:14.1462490Z Running water-rock reaction...
2026-01-05T01:34:14.1462790Z Using wrm_data_latest.csv to react Bison.Pool
2026-01-05T01:34:14.1463020Z 
2026-01-05T01:34:14.1463200Z The sample 'Bison Pool' experienced errors during the reaction:
2026-01-05T01:34:14.1463620Z  * Error - (EQ6/intmtb) A mass balance is defined on the input
2026-01-05T01:34:14.1464180Z        file for NH4+ (Aqueous solution), but this species isn't in the
2026-01-05T01:34:14.1464640Z        currently active basis set. Either it isn't on the current data file
2026-01-05T01:34:14.1465090Z        or it has been suppressed as by an nxmod or iopt(15) option.
2026-01-05T01:34:14.1465390Z 
2026-01-05T01:34:14.1465770Z Mass transfer results for sample 'Bison Pool' could not be saved because the calculation did not finish due to error(s).
2026-01-05T01:34:14.1466140Z 
2026-01-05T01:34:14.1466350Z Using wrm_data_latest.csv to react Spray.Geyser.Source
2026-01-05T01:34:14.1466630Z 
2026-01-05T01:34:14.1466780Z The sample 'Spray Geyser Source' experienced errors during the reaction:
2026-01-05T01:34:14.1467280Z  * Error - (EQ6/intrct) The reactant antigorite isn't among
2026-01-05T01:34:14.1467590Z        the loaded minerals.
2026-01-05T01:34:14.1467840Z 
2026-01-05T01:34:14.1468170Z Mass transfer results for sample 'Spray Geyser Source' could not be saved because the calculation did not finish due to error(s).
2026-01-05T01:34:14.1468630Z 
2026-01-05T01:34:14.1468810Z Using wrm_data_latest.csv to react Crater.Hills.Geyser
2026-01-05T01:34:14.1469230Z Using wrm_data_latest.csv to react Ambergris
2026-01-05T01:34:14.1469670Z Using wrm_data_latest.csv to react MLS.Source
2026-01-05T01:34:14.1469990Z Using wrm_data_latest.csv to react Gas.Crack
2026-01-05T01:34:14.1470230Z 
2026-01-05T01:34:14.1470370Z The sample 'Gas Crack' experienced errors during the reaction:
2026-01-05T01:34:14.1470880Z  * Error - (EQ6/path) The equilibrium calculation failed at the initial value
2026-01-05T01:34:14.1471230Z        of reaction progress.
2026-01-05T01:34:14.1471400Z 
2026-01-05T01:34:14.1471690Z Mass transfer results for sample 'Gas Crack' could not be saved because the calculation did not finish due to error(s).
2026-01-05T01:34:14.1472160Z 
2026-01-05T01:34:14.1472320Z Using wrm_data_latest.csv to react Snail
2026-01-05T01:34:14.1472470Z 
2026-01-05T01:34:14.1472670Z The sample 'Snail' experienced errors during the reaction:
2026-01-05T01:34:14.1473220Z  * Error - (EQ6/path) The equilibrium calculation failed at the initial value
2026-01-05T01:34:14.1473650Z        of reaction progress.
2026-01-05T01:34:14.1473850Z 
2026-01-05T01:34:14.1474130Z Mass transfer results for sample 'Snail' could not be saved because the calculation did not finish due to error(s).
2026-01-05T01:34:14.1474580Z 
2026-01-05T01:34:14.1474690Z [OK] Reaction completed
2026-01-05T01:34:14.1475010Z [OK] misc_params is a DataFrame with 12 rows
2026-01-05T01:34:14.1475250Z 
2026-01-05T01:34:14.1475350Z ============================================================
2026-01-05T01:34:14.1475730Z TEST SUMMARY
2026-01-05T01:34:14.1475960Z ============================================================
2026-01-05T01:34:14.1476240Z [PASS] Bundled Executables
2026-01-05T01:34:14.1476560Z [PASS] Import and Basic Usage
2026-01-05T01:34:14.1476890Z [PASS] Download Latest data0.wrm
2026-01-05T01:34:14.1477130Z [PASS] EQPT Data0 to Data1 Conversion
2026-01-05T01:34:14.1477440Z [PASS] Simple Speciation (wrm database)
2026-01-05T01:34:14.1477820Z [PASS] Water-Rock Reaction
2026-01-05T01:34:14.1478250Z ============================================================
2026-01-05T01:34:14.1478520Z 
2026-01-05T01:34:14.1478580Z [PASS] All tests passed!
2026-01-05T01:34:14.3190640Z Post job cleanup.
2026-01-05T01:34:14.6187600Z Post job cleanup.
2026-01-05T01:34:14.7053760Z [command]/opt/homebrew/bin/git version
2026-01-05T01:34:14.7216970Z git version 2.50.1
2026-01-05T01:34:14.7255340Z Copying '/Users/runner/.gitconfig' to '/Users/runner/work/_temp/43fa8d99-809b-4e12-893e-08371db16ec1/.gitconfig'
2026-01-05T01:34:14.7261210Z Temporarily overriding HOME='/Users/runner/work/_temp/43fa8d99-809b-4e12-893e-08371db16ec1' before making global git config changes
2026-01-05T01:34:14.7261920Z Adding repository directory to the temporary git global config as a safe directory
2026-01-05T01:34:14.7271780Z [command]/opt/homebrew/bin/git config --global --add safe.directory /Users/runner/work/aqequil/aqequil
2026-01-05T01:34:14.7373170Z [command]/opt/homebrew/bin/git config --local --name-only --get-regexp core\.sshCommand
2026-01-05T01:34:14.7425340Z [command]/opt/homebrew/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :"
2026-01-05T01:34:14.8279840Z [command]/opt/homebrew/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader
2026-01-05T01:34:14.8317300Z http.https://github.com/.extraheader
2026-01-05T01:34:14.8402930Z [command]/opt/homebrew/bin/git config --local --unset-all http.https://github.com/.extraheader
2026-01-05T01:34:14.8404500Z [command]/opt/homebrew/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :"
2026-01-05T01:34:14.9264690Z [command]/opt/homebrew/bin/git config --local --name-only --get-regexp ^includeIf\.gitdir:
2026-01-05T01:34:14.9289160Z [command]/opt/homebrew/bin/git submodule foreach --recursive git config --local --show-origin --name-only --get-regexp remote.origin.url
2026-01-05T01:34:15.0593320Z Cleaning up orphan processes
